博士生导师

 

杨作仁

科研经历:

自工作以来,先后主持国家自然基金面上和青年项目、 河南省优秀青年基金、中央级公益性科研院所基本科研业务费专项等项目 6项,作为骨干成员参加国家自然基金创新群体项目和重大项目, 2015 年入选中国科协“青年人才托举工程”, 2017 年入选中国农业科学院青年英才计划。长期围绕棉花生产中的重要农艺性状开展研究,发掘棉花相关的功能基因并解析其调控机制,开展了棉花群体分化机制的研究,首次揭示倒位调控陆地棉遗传多样性,及倒位对陆地棉群体分化的影响,对深入理解棉花遗传多样性低的原理提供了理论基础。相关的研究发表在国际著名期刊Nature Communication 和 Trends in Plant Science。油菜素内脂(BR)是调控棉花株型和纤维发育的关键因素,利用棉花 BR 缺陷型突变体,结合分子遗传学和生物信息学等多种手段,全面发掘了棉花 BR 信号途径的元件, 2019 年 National Science Review 发表评述认为“研究增强了我们对BR 调控纤维发育的理解,为未来的遗传改良奠定了基础”。棉花 BR 基因改良棉花株型的研究获得美国和欧洲发明专利授权,有望在棉花株型改良和机械化生产中发挥重要作用。

科研成果:

自参加工作至今,先后以第一作者或通讯作者(含共同)在 Nature Communication、Trends in Plant Science、New Phytologist、Journal of Experimental Botany 和 Plant Biotechnol Journal 等期刊发表 SCI 论文 20 余篇;参编著作 1 部,以第二发明人获得国际发明专利两项; 2017 年获得中华农业科技奖(第四完成人)。培养博士5名,硕士生4名(含联合培养及专业学位硕士生)。

获奖成果:

2017 年获得中华农业科技奖(第四完成人)。

授权专利:

植物株形相关基因及其应用(欧洲,EP2963117B1,2018.09,第二)

植物株形相关基因及其应用(美国,US 10041085 B2,2018.08,第二)

一种手摇式花粉采集装置 (中国,ZL201520173980.5,2015.08,第六)

代表性论文:

1.Yang Z, Qanmber G, Wang Z, et al. Gossypium genomics: trends, scope, and utilization for cotton improvement[J]. Trends in plant science, 2020, 25(5): 488-500.第一作者JCR Q1

2.Yang Z, Zhang C, Yang X, et al. PAG1, a cotton brassinosteroid catabolism gene, modulates fiber elongation[J]. New phytologist, 2014, 203(2): 437-448.第一作者JCR Q1

3.Yang Z, Ge X, Yang Z, et al. Extensive intraspecific gene order and gene structural variations in upland cotton cultivars[J]. Nature communications, 2019, 10(1): 1-13.共一第一作者JCR Q1

4.Wang Z, Yang Z, Li F. Updates on molecular mechanisms in the development of branched trichome in Arabidopsis and nonbranched in cotton[J]. Plant biotechnology journal, 2019, 17(9): 1706-1722.共一第一作者JCR Q1

5.Qanmber G, Lu L, Liu Z, et al. Genome-wide identification of GhAAI genes reveals that GhAAI66 triggers a phase transition to induce early flowering[J]. Journal of experimental botany, 2019, 70(18): 4721-4736.通讯作者JCR Q1

6.Wu H, Ren Z, Zheng L, et al. The bHLH transcription factor GhPAS1 mediates BR signaling to regulate plant development and architecture in cotton[J]. The Crop Journal, 2021.通讯作者JCR Q1

7. Wang L, Cheng H, Xiong F, et al. Comparative phosphoproteomic analysis of BR-defective mutant reveals a key role of GhSK13 in regulating cotton fiber development[J]. Science China Life Sciences, 2020, 63(12): 1905-1917. 通讯作者JCR Q1

8.Li S, Liu Z, Chen G, et al. Identification and analysis of GhEXO gene family indicated that GhEXO7_At promotes plant growth and development through brassinosteroid signaling in cotton (Gossypium hirsutum L.)[J]. Frontiers in plant science, 2021: 1840. 共同通讯作者JCR Q1

9.Liu L, Xie Z, Lu L, et al. Identification of BR biosynthesis genes in cotton reveals that GhCPD-3 restores BR biosynthesis and mediates plant growth and development[J]. Planta, 2021, 254(4): 1-17. 通讯作者JCR Q1

10.Chen G, Liu Z, Qanmber G, et al. Genome-wide analysis of ZAT gene family revealed GhZAT6 regulates salt stress tolerance in G. hirsutum[J]. Plant Science, 2021: 111055. 通讯作者JCR Q1

11. Liu Z, Qanmber G, Lu L, et al. Genome-wide analysis of BES1 genes in Gossypium revealed their evolutionary conserved roles in brassinosteroid signaling[J]. Science China Life Sciences, 2018, 61(12): 1566-1582. 通讯作者JCR Q1

12. Li J, Yu D, Qanmber G, et al. GhKLCR1, a kinesin light chain-related gene, induces drought-stress sensitivity in Arabidopsis[J]. Science China Life Sciences, 2019, 62(1): 63-75. 通讯作者JCR Q1

13. Wu H, Zheng L, Qanmber G, et al. Response of phytohormone mediated plant homeodomain (PHD) family to abiotic stress in upland cotton (Gossypium hirsutum spp.)[J]. BMC Plant Biology, 2021, 21(1): 1-20. 通讯作者JCR Q1

14. Wang L, Yang Z, Zhang B, et al. Genome-wide characterization and phylogenetic analysis of GSK gene family in three species of cotton: evidence for a role of some GSKs in fiber development and responses to stress[J]. BMC plant biology, 2018, 18(1): 1-21. 通讯作者JCR Q1

15. Yu D, Qanmber G, Lu L, et al. Genome-wide analysis of cotton GH3 subfamily II reveals functional divergence in fiber development, hormone response and plant architecture[J]. BMC plant biology, 2018, 18(1): 1-18. 通讯作者JCR Q1

16. Ren Z, Yu D, Yang Z, et al. Genome-wide identification of the MIKC-type MADS-box gene family in Gossypium hirsutum L. unravels their roles in flowering[J]. Frontiers in plant science, 2017, 8: 384. 通讯作者JCR Q1

17. Zhang Y, He P, Yang Z, et al. A genome-scale analysis of the PIN gene family reveals its functions in cotton fiber development[J]. Frontiers in plant science, 2017, 8: 461. 共一第一作者JCR Q1

18. Cheng Y, Lu L, Yang Z, et al. GhCaM7-like, a calcium sensor gene, influences cotton fiber elongation and biomass production[J]. Plant Physiology and Biochemistry, 2016, 109: 128-136. 通讯作者JCR Q1

19. Yang Z, Li C, Wang Y, et al. GhAGL15s, preferentially expressed during somatic embryogenesis, promote embryogenic callus formation in cotton (Gossypium hirsutum L.)[J]. Molecular genetics and genomics, 2014, 289(5): 873-883.第一作者

20. Mo H, Wang L, Ma S, et al. Transcriptome profiling of Gossypium arboreum during fiber initiation and the genome-wide identification of trihelix transcription factors[J]. Gene, 2019, 709: 36-47.共同通讯作者

21. Zheng L, Wu H, Qanmber G, et al. Genome-Wide Study of the GATL Gene Family in Gossypium hirsutum L. Reveals that GhGATL Genes Act on Pectin Synthesis to Regulate Plant Growth and Fiber Elongation[J]. Genes, 2020, 11(1): 64. 通讯作者

22. Qanmber G, Liu J, Yu D, et al. Genome-wide identification and characterization of the PERK gene family in Gossypium hirsutum reveals gene duplication and functional divergence[J]. International journal of molecular sciences, 2019, 20(7): 1750. 通讯作者

23. Qanmber G, Ali F, Lu L, et al. Identification of histone H3 (HH3) genes in Gossypium hirsutum revealed diverse expression during ovule development and stress responses[J]. Genes, 2019, 10(5): 355. 通讯作者

24. Liu Z, Ge X, Yang Z, et al. Genome-wide identification and characterization of SnRK2 gene family in cotton (Gossypium hirsutum L.)[J]. BMC genetics, 2017, 18(1): 1-14. 共一第一作者

出版著作:

棉花体细胞胚胎发生[M].科学出版社,2017年