Gossypium Genomics: Trends, Scope, and Utilization for Cotton Improvement

Yang ZR, Qanmber G, Wang Z, Yang ZE, Li FG

Trends in Plant Science

25(5): 488-500

Global Dynamic Molecular Profiles of Stomatal Lineage Cell Development by Single-Cell RNA Sequencing

Liu ZX, Zhou YP, Guo JG, Li JA, Tian ZX, Zhu ZN, Wang JJ, Wu R, Zhang B, Hu YJ, Sun YJ, Shangguan Y, Li WQ, Li T, Hu YH, Guo CX, Rochaix JD, Miao YC, Sun XW

Molecular Plant

13(8): 1178–1193

Pectin Lyase Enhances Cotton Resistance to Verticillium wilt by Inducing Cell Apoptosis of Verticillium dahliae

Zhang J, Yu XR, Zhang CJ, Zhang Q, Sun Y, Zhu HQ, Tang CM

Journal of Hazardous Materials

404: 124029

A Copy Number Variant at the HPDA-D12 Locus Confers Compact Plant Architecture in Cotton

Ji GX, Liang CZ, Cai YF, Pan ZE, Meng ZG, Li YY, Jia YH, Miao YC, Pei XX, Gong WF, Wang XY, Gao Q, Peng Z, Wang LR, Sun JL, Geng XL, Wang PP,  Chen BJ, Wang PL, Zhu T, He SP, Zhang R, Du XM

New Phytologist

doi: 10.1111/nph.17059

Identification of Candidate Genes for Key Fibre-related QTLs and Derivation of Favourable Alleles in Gossypium hirsutum Recombinant Inbred Lines with G. barbadense Introgressions

Wang FR, Zhan JX, Chen Y,Chuanyun Zhang CY, Gong JW, Song ZQ, Zhou J, Wang JJ, Zhao CJ, Jiao MJ, Liu AY, Du ZH, Yuan YL, Fan SJ, Zhang J

Plant Biotechnology Journal

18(3): 707-720

Genome Sequencing of the Australian Wild Diploid Species Gossypium australe Highlights Disease Resistance and Delayed Gland Morphogenesis

Cai YF, Cai XY, Wang QL, Wang P, Zhang Y, Cai CW, Xu YC, Wang KB, Zhou ZL, Wang CX, Geng SP, Li B, Dong Q, Hou YQ, Wang H, Ai P, Liu Z, Yi FF, Sun MS, An GY, Cheng JR, Zhang YY, Shi Q, Xie YH, Shi XY, Chang Y, Huang FF, Chen Y, Hong SM, Mi LY, Sun Q, Zhang L, Zhou BL, Peng RH, Zhang X, Liu F

Plant Biotechnology Journal

18(3): 814-828

The Gland Localized CGP1 Controls Gland Pigmentation and Gossypol Accumulation in Cotton

Gao W, Xu FC, Long L, Li Y, Zhang JL, Chong L, Botella JR, Song CP

Plant Biotechnology Journal

18(7): 1573-1584

Genetic and Evolution Analysis of Extrafloral Nectary in Cotton

Hu W, Qin WQ, Jin YY, Wang P, Yan QD, Li FG, Yang ZE

Plant Biotechnology Journal

18(10): 2081-2095

Transgenic Insect-resistant Bt Cotton Expressing Cry1Ac/CpTI does not Affect the Mirid Bug Apolygus lucorum

Niu L, Liu F, Zhang S, Luo JY, Zhang LJ, Ji JC, Gao XK, Ma WH, Cui JJ

Environmental Pollution

264: 114762

Post-transcriptional Regulation of Insect Metamorphosis and Oogenesis

Song JS, Zhou ST

Cellular and Molecular Life Sciences

77(10): 1893-1909

Chromosome-level Genome Assembly of the Predator Propylea japonica to Understand Its Tolerance to Insecticides and High Temperatures

Zhang LJ, Li S, Luo JY, Du P, Wu LK, Li YR, Zhu XZ, Wang Li, Zhang S, Cui JJ

Molecular Ecology Resources

20(1): 292-307

Comparative Functional Analyses of DWARF14 and KARRIKIN INSENSITIVE2 in Drought Adaptation of Arabidopsis thaliana

Li WQ, Nguyen KH, Chu HD, Watanabe Y, Osakabe Y, Sato M, Toyooka K, Seo M, Tian L, Tian CJ, Yamaguchi S, Tanaka M, Seki M, Tran LSP

Plant Journal

103(1): 111-127

Genome-wide Dissection of Hybridization for Fiber Qualityand Yield-related Traits in Upland Cotton

Geng XL, Qu YJ, Sarfraz Z, Jia YH, He SP, Pan ZE, Sun JL, Muhammad SI, Wang QL, Qin HD, Liu JH, Liu H, Yang J, Ma ZY, Xu DY, Yang JL, Zhang JB, Li ZK, Cai ZM, Zhang XL, Zhang X, Zhou GY, Li L, Zhu HY, Wang LR, Pang BY, Sun GF, Du XM

Plant Journal

104(5): 1285-1300

Histone Tales: Lysine Methylation, a Protagonist in Arabidopsis Development

Cheng K, Xu YC, Yang C, Ouellette L, Niu LJ, Zhou XC, Chu LT, Zhuang F, Liu J, Wu HL, Charron JB, Luo M

Journal of Experimental Botany

71(3): 793-807

Juvenile Hormone Acts Through FoxO to Promote Cdc2 and Orc5 Transcription For Polyploidy-dependent Vitellogenesis

Wu ZX, He QJ, Zeng BJ, Zhou HD, Zhou ST

Development

147(18): dev188813

Freeze-Substitution-Hi-C, a Convenient and Cost-effective Method for Capturing the Natural 3D Chromatin Conformation from Frozen Samples

Zheng W, Yang ZE, Ge XY, Yang ZR, Li FG

Journal of Genetics and Genomics

821: 1-12

Knockdown of Gh_A05G1554 (GhDHN_03) and Gh_D05G1729 (GhDHN_04) Dehydrin Genes, Reveals their Potential Role in Enhancing Drought and Salt Tolerance in Cotton

Kirungu JN, Magwanga RO, Lu P, Shiraku ML, Mehari TG, Cai XY, Xu YC, Hou YQ, Zhou Y, Cai YF, Hao FS, Zhou ZL, Wang KB, Liu F

Genomics

112: 1902-1915

Genome-wide Identification and Characterization of HSP70 Gene Family in Four Species of Cotton

Abdul R, Muhammad AR, Abdul Q, Du XM, Lori H, Muhammad TA

Genomics

112: 4442-4453

Molecular Characterization, Expression and Interaction of MAPK, MAPKK and MAPKKK Genes in Upland Cotton and MAPKKK Genes in Upland Cotton

Yin ZJ, Zhu WD, Zhang ZP, Chen XG, Wang W, Lin H, Wang JJ, Ye WW

Genomics

doi: 10.1016/j.ygeno.2020.11.004

Differentially Expressed bZIP Transcription Factors Confer Multi-tolerances in Gossypium hirsutum L.

Wang XG, Lu XK, Malik WA, Chen XG, Wang JJ, Wang DL, Wang S,Chen C, Guo LX, Ye WW

International Journal of Biological Macromolecules

146: 569-578

Genome-wide Expression Analysis Suggests Glutaredoxin Genes Response to Various Stresses in Cotton

Malik WA, Wang XG, Wang XL, Shu N, Cui RF, Chen XG, Wang DL, Lu XK, Yin ZJ, Wang JJ, Ye WW

International Journal of Biological Macromolecules

153: 470-491

EMBRYONIC FLOWER2B, Coming From a Stable QTL, Represses the Floral Transition in Cotton

Ma QF, Qu ZY, Wang XY, Qiao KK, Naimatullah M, Fan SL

International Journal of Biological Macromolecules

163: 1087-1096

Genome-wide Identification of NF-YA Gene Family in Cotton and the Positive Role of GhNF-YA10 and GhNF-YA23 in Salt Tolerance

Zhang Q, Zhang JJ, Wei HL, Fu XK, Ma L, Lu JH, Wang HT, Yu SX

International Journal of Biological Macromolecules

165: 2103-2115

Glutathione S-transferases GhGSTF1 and GhGSTF2 Involved in the Anthocyanin Accumulation in Gossypium hirsutum L

Li SY, Zuo DY, Cheng HL, Ali M, Wu CF, Ashraf J, Zhang YP, Feng XX，Lin ZX, Wang QL，Lv LL, Song GL

International Journal of Biological Macromolecules

165: 2565-2575

Cryptochrome-mediated Hypocotyl Phototropism was Regulated Antagonistically by Gibberellic Acid and Sucrose in Arabidopsis

Zhao QP, Zhu JD, Li NN, Wang XN, Zhao X, Zhang X

Journal of Integrative Plant Biology

62(5): 614-630

Transgenic Cry1Ac/CpTI Cotton Assessment Finds No Detrimental Effects on the Insect Predator Chrysoperla Sinica

Liu F, Luo JY, Zhu XZ, Zhao CC, Niu L, Cui JJ

Ecotoxicology and Environmental Safety

208: 111680

Patterns of Presence-absence Variants in Upland Cotton

Liu JF, Zhang XL, Dou LL, Li W, Zhou XJ, Liu YG, Pei XY, Ren ZY, Zhang WS, Li HZ, Wang WB, Zou CS, He KL, Zhang F, Ma WY, Shang HH, Li HB, Yang DG, Xiao GH, Ma XF

Science China-Life Sciences

63(10): 1600-1603

Expression Patterns and Functional Divergence of Homologous Genes Accompanied by Polyploidization in Cotton (Gossypium hirsutum L.)

Peng Z, Chen H, Sun GF, Pan ZE, Wang X, Geng XL, He SP, Du XM

Science China-Life Sciences

63(10): 1565-1579

Fighting Against Fall Armyworm by Using Multiple Genes Pyramiding and Silencing (MGPS) Technology

Ren MZ, Muhammad MZ, Mo HJ, Yang ZE, Li FG

Science China-Life Sciences

62(12): 1703-1706

Comparative Phosphoproteomic Analysis of BR-defective Mutant Reveals a Key Role of GhSK13 in Regulating Cotton Fiber Development

Wang LL, Cheng H, Xiong FJ, Ma SY, Zheng L, Song Y, Deng KX, Wu HH, Li FG, Yang ZR

Science China-Life Sciences

doi: 10.1007/s11427-020-1728-9

Genome-Wide Characterization and Analysis of CIPK Gene Family in Two Cultivated Allopolyploid Cotton Species: Sequence Variation, Association with Seed Oil Content, and the Role of GhCIPK6

Cui YP, Su Y, Wang JJ, Jia B, Wu M, Pei WW, Zhang JF, Yu JW

International Journal of Molecular Sciences

21(3): 863

Redox Components: Key Regulators of Epigenetic Modifications in Plants

Kumar RMS, Wang Y, Zhang X, Cheng H, Sun L, He S, Hao FS

International Journal of Molecular Sciences

21(4): 1419

Transcriptome Analysis Reveals Differences in Key Genes and Pathways Regulating Carbon and Nitrogen Metabolism in Cotton Genotypes under N Starvation and Resupply

Asif I, Dong Q, Wang XR, Gui HP, Zhang HH, Zhang XL, Song MZ

International Journal of Molecular Sciences

21(4): 1500

Comparative Transcriptome Analysis Provides Insights into the Seed Germination in Cotton in Response to Chilling Stress

Shen Q, Zhang SP, Liu SD, Chen J, Ma HJ, Cui ZQ, Zhang XM, Ge CW, Liu RH, Li Y, Zhao XH, Yang GZ, Song MZ, Pang CY

International Journal of Molecular Sciences

21(6): 2067

Chemical Defoliant Promotes Leaf Abscission by Altering ROS Metabolism and Photosynthetic Efficiency in Gossypium hirsutum

Jin DS, Wang XR, Xu YC, Gui HP, Zhang HH, Dong Q, Sikder RK, Yang GZ, Song MZ

International Journal of Molecular Sciences

21(8): 2738

Molecular Evidence that Lysiphlebia japonica Regulates the Development and Physiological Metabolism of Aphis gossypii

Gao XK, Xue H, Luo JY, Ji JC, Zhang LJ, Niu L, Zhu XZ, Wang L, Zhang S, Cui JJ

International Journal of Molecular Sciences

21(13): 4610

Transcriptomic Profiling of Young Cotyledons Response to Chilling Stress in Two Contrasting Cotton (Gossypium hirsutum L.) Genotypes at the Seedling Stage

Cheng GM, Zhang LY, Wang HT, Lu JH, Wei HL, Yu SX

International Journal of Molecular Sciences

21(14): 5095

Histone Deacetylase Inhibitor SAHA Improves High Salinity Tolerance Associated with Hyperacetylation-Enhancing Expression of Ion Homeostasis-Related Genes in Cotton.

He SB, Hao YF, Zhang Q, Zhang PH, Ji FF, Cheng H, Lv D, Sun YF, Hao FS, Miao C

International Journal of Molecular Sciences

21(19): 7105

The Cotton BEL1-Like Transcription Factor GhBLH7-D06 Negatively Regulates the Defense Response against Verticillium dahliae

Ma Q, Wang NH, Ma L, Lu JH, Wang HT, Wang CC, Yu SX, Wei HL

International Journal of Molecular Sciences

21(19): 7126

Genome-Wide Identification of the Gossypium hirsutum NHX Genes Reveals That the Endosomal-Type GhNHX4A Is Critical for the Salt Tolerance of Cotton

Ma WY，Ren ZY, Zhou Y, Zhang F, Feng JP, Liu W, Ma XF

International Journal of Molecular Sciences

21(20): 7712

Examining Two Sets of Introgression Lines Across Multiple Environments Reveals Background-independent and Stably Expressed Quantitative Trait Loci of Fiber Quality in Cotton

Shi YZ, Liu AY, Li JW, Zhang JF, Li SQ, Zhang JF, Ma LJ, He R, Song WW, Guo LX, Lu QW, Xiang XH, Gong WK, Gong JW, Ge Q, Shang HH, Deng XY, Pan JT, Yuan YL

Theoretical and Applied Genetics

133(7): 2075-2093

Extensive Haplotypes are Associated with Population Differentiation and Environmental Adaptability in Upland Cotton (Gossypium hirsutum)

Dai PH, Sun GF, Jia YH, Pan ZE, Tian YB, Peng Z, Li HG, He SP, Du XM

Theoretical and Applied Genetics

133(12): 3273-3285

Open-Bud Duplicate Loci are Identified as MML10s, Orthologs of MIXTA-Like Genes on Homologous Chromosomes of Allotetraploid Cotton

Chen W, Yao JB, Li Y, Zhu SH, Guo Y, Fang ST, Zhao LJ, Wang JY, Yuan L, Lu YJ, Zhang YS

Frontiers in Plant Science

11: 81

Nitrogen Fertilization Increases Root Growth and Coordinates the Root–Shoot Relationship in Cotton

Chen J, Liu LT, Wang ZB, Zhang YJ, Sun HC, Song SJ, Bai ZY, Lu ZY, Li CD

Frontiers in Plant Science

11: 880

Introgression Leads to Genomic Divergence and Responsible for Important Traits in Upland Cotton

He SP, Wang PP, Zhang YM, Dai PH, Mian FN, Jia YH, Peng Z, Pan ZE, Sun JL, Wang LR, Sun GF, Du XM

Frontiers in Plant Science

11: 929

Comprehensive Genome-Wide Analysis of Thaumatin-Like Gene Family in Four Cotton Species and Functional Identification of GhTLP19 Involved in Regulating Tolerance to Verticillium dahlia and Drought

Li ZS, Wang XY, Cui YP, Qiao KK, Zhu LF, Fan SL, Ma QF

Frontiers in Plant Science

11: 575015

A Retrotransposon Insertion in GhMML3_D12 Is Likely Responsible for the Lintless Locus li3 of Tetraploid Cotton

Chen W, Li Y, Zhu SH, Fang ST, Zhao LJ, Guo Y, Wang JY, Yuan L, Lu YJ, Liu F, Yao JB, Zhang YS

Frontiers in Plant Science

11: 593679

Insights into Drought Stress Signaling in Plants and the Molecular Genetic Basis of Cotton Drought Tolerance

Tahir M, Shiguftah K, Muhammad A, Zubair A, Muhammad KNS, Abdul G, Du XM

Cells

9(1): 105

CGTase, aNovel Antimicrobial Protein from Bacillus cereus YUPP-10, Suppresses Verticillium dahliae and Mediates Plant

Defence Responses

Zhou JL，Feng ZL，Liu SC，Wei F，Shi YQ，Zhao LH，Huang WT，Zhou Y，Feng HJ，Zhu HQ

Molecular Plant Pathology

doi: 10.1111/mpp.13014

Flavonoid Biosynthetic and Starch and Sucrose Metabolic Pathways are Involved in the Pigmentation of Naturally Brown-colored Cotton Fibers

Peng Z, Gao Q, Luo C, Gong WF, Tang SW, Zhang XM, Song W, Wang ZZ, Liu HL, Du XM, Liu HF

Industrial Crops & Products

158: 113045

Alien Genomic Introgressions Enhanced Fiber Strength in Upland Cotton (Gossypium hirsutum L.)

Wang LY, He SP, Dia S, Sun GF, Liu XY, Wang XY, Pan ZE, Jia YH, Wang LR, Pang BY, Sun XZ, Song XL

Industrial Crops & Products

159: 113028

Cotton Plant Defence Against a Fungal Pathogen is Enhanced by Expanding BLADE-ON-PETIOLE1 Expression Beyond Lateral-organ Boundaries

Zhang ZN, Wang P, Luo XL, Yang CL, Tang Y, Wang ZA, Hu G, Ge XY, Xia GX, Wu JH

Communications Biology

2: 238

Negative Roles of Strigolactone-related SMXL6, 7 and 8 Proteins in Drought Resistance in Arabidopsis

Li WQ, Nguyen KH, Tran CD, Watanabe Y, Tian CJ, Yin XJ, Li K, Yang Y, Guo JG, Miao YC, Yamaguchi S, Tran LSP

Biomolecules

10(4): 607

Molecular Evidence for the Involvement of Cotton GhGLP2, in Enhanced Resistance to Verticillium and Fusarium Wilts and Oxidative Stress

Pei YK, Zhu YT, Jia YJ, Ge XY, Li XC, Li FG, Hou YX

Scientific Reports

10: 12510

Genome-Wide Study of the GATL Gene Family in Gossypium hirsutum L. Reveals that GhGATL Genes Act on Pectin Synthesis to Regulate Plant Growth and Fiber Elongation

Zheng L, Wu HH, Qanmber G, Ali F, Wang LL, Liu Z, Yu DQ, Wang Q, Xu AX, Yang ZR

Genes

11: 64

Genotyping by Sequencing Revealed QTL Hotspots for Trichome-Based Plant Defense in Gossypium hirsutum

Ahmed H, Nazir MF , Pan ZE , Gong WF, Muhammad SI, He SP, Du XM

Genes

11: 368

Comparative Transcriptomic Analysis to Identify the Genes Related to Delayed Gland Morphogenesis in Gossypium bickii

Ali M, Cheng HL, Mahtab S, Li SY, Muhammad BT, Mian FN, Feng XX, Zhang YP, Zuo DY, Lv LM, Wang QL, Song GL

Genes

11: 472

Genome-Wide Identification and Comparative Analysis of Myosin Gene Family in Four Major Cotton Species

Ma CH, Zhao ZB, Wang N, Muhammad TA, Du XM

Genes

11: 731

Transcriptome Analysis Reveals a Gene Expression Pattern Associated with Fuzz Fiber Initiation Induced by High Temperature in Gossypium barbadense

Cheng GM, Zhang LY, Wei HL, Wang HT, Lu JH, Yu SX

Genes

11: 1066

Genome-Wide Analysis of OPR Family Genes in Cotton Identified a Role for GhOPR9 in Verticillium dahliae Resistance

Liu SC, Sun RB, Zhang XJ, Feng ZL, Wei F, Zhao LH, Zhang YL, Zhu LF, Feng HJ, Zhu HQ

Genes

11: 1134

Response of Cotton Fruit Growth, Intraspecific Competition and Yield to Plant Density

Li XF, Han YC, Wang GP, Feng L, Wang ZB, Yang BF, Du WL, Lei YP, Xiong SW, Zhi XY, Xing FF, Fan ZY, Xin MH, Li YB

European Journal of Agronomy

114: 125991

Insight into the Relationship Between S-lignin and Fiber Quality Based on Multiple Research Methods

Zhang SY, Jia TT, Zhang Z, Zou XY, Fan SM, Lei K, Jiang X, Niu DD, Yuan YL, Shang HH

Plant Physiology and Biochemistry

147: 251-261

Growth and Nitrogen Metabolism are Associated with Nitrogen-use Efficiency in Cotton Genotypes

Asif I, Dong Q, Wang Z, Wang XR, Gui HP, Zhang HH,Pang NC, Zhang XL, Song MZ

Plant Physiology and Biochemistry

149: 61-74

Comparative Acetylome Analysis of Wild-type and Fuzzless-lintless Mutant Ovules of Upland Cotton (Gossypium hirsutum Cv. Xu142) Unveils Differential Protein Acetylation May Regulate Fiber Development

Singh PK, Gao W, Liao P, Li Y, Xu FC, Ma XN, Long L, Song CP

Plant Physiology and Biochemistry

150: 56-70

Gossypium hirsutum Salt Tolerance is Enhanced by Overexpression of G.arboreum JAZ1

Zhao G, Song Y, Wang QH, Yao DX, Li DL, Qin WQ, Ge XY, Yang ZR, Xu WY, Su Z, Zhang XY, Li FG, Wu JH

Frontiers in Bioengineering and Biotechnology

8: 157

Genetic Regulatory Networks for Salt-alkali Stress in Gossypium hirsutum with Differing Morphological Characteristics

Xu YC, Magwanga RO, Yang X, Jin DS, Cai XY, Hou YQ, Wei YY, Zhou ZL, Wang KB, Liu F

BMC Genomics

21(1): 15

Genome-wide Identification and Analyses of the AHL Gene Family in Cotton (Gossypium)

Zhao LJ, Lv YJ, Chen W, Yao JB, Li Y, Li QL, Pan JW, Fang ST,Sun J, Zhang YS

BMC Genomics

21(1): 69

Comparative Transcriptome Analysis of Inbred Lines and Contrasting Hybrids Reveals Overdominance Mediate Early Biomass Vigor in Hybrid Cotton

Shahzad K, Zhang XX, Guo LP, Qi TX, Tang HN, Zhang M, Zhang BB, Wang HL, Qiao XQ, Feng JJ, Wu JY, Xing CZ

BMC Genomics

21(1): 140

Genome-wide Identification and Expression Analysis of PUB Genes in Cotton

Lu XK, Shu N, Wang DL, Wang JJ, Chen XG, Zhang BL, Wang S, Guo LX, Chen C, Ye WW

BMC Genomics

21(1): 213

Casparian Strip Membrane Domain Proteins in Gossypium arboreum: Genome-wide Identification and Negative Regulation of Lateral Root Growth

Wang XY, Zhang YM, Wang LY, Pan ZE, He SP, Gao Q, Chen BJ, Gong WF, Du XM

BMC Genomics

21(1): 340

Disequilibrium Evolution of the Fructose-1,6-bisphosphatase Gene Family Leads to Their Functional Biodiversity in Gossypium species

Ge Q, Cui YL, Li JW, Gong JW, Lu JH, LI PT, Shi YZ, Shang HH, Liu AY, Deng XY, Pan JT, Chen QJ, Yuan YL, Gong WK

BMC Genomics

21(1): 379

Genome-wide Identification and Characterization of Multiple C2 Domains and Transmembrane Region Proteins in Gossypium hirsutum

Hao PB, Wang HT, Ma L, Wu AM, Chen PY, Cheng SS, Wei HL, Yu SX

BMC Genomics

21(1): 445

Improved Reconstruction and Comparative Analysis of Chromosome 12 to Rectify Misassemblies in Gossypium arboretum

Javaria A， Zuo DY，Cheng HL，Waqas M，Wang QL，Zhang YP，Muhammad AA，Yang QH， Feng XX，Yu JZ，Song GL

BMC Genomics

21(1): 470

Genome-wide Characterization and Expression Analysis of Geranylgeranyl Diphosphate Synthase Genes in Cotton (Gossypium spp.) in Plant Development and Abiotic Stresses

Ali F, Qanmber G, Wei ZZ, Yu DQ, Li YH, Gan L, Li FG, Wang Z

BMC Genomics

21(1): 561

Genome-wide Identification and Expression Patterns Analysis of the RPD3/HDA1 Gene Family in Cotton

Zhang JJ, Wu AM, Wei HL, Hao PB, Zhang Q, Tian MM, Yang X, Cheng SS, Fu XK, Ma L, Wang HT, Yu SX

BMC Genomics

21(1): 643

A Comprehensive Analysis of Cotton VQ Gene Superfamily Reveals Their Potential and Extensive Roles in Regulating Cotton Abiotic Stress

Chen PY, Wei F, Cheng SS, Ma L, Wang HT, Zhang M, Mao GZ, Lu JH, Hao PB, Adeel A, Gu LJ, Ma Q, Wu AM, Wei HL,Yu SX

BMC Genomics

21(1): 795

Deficiencies in the Formation and Regulation of Anther Cuticle and Tryphine Contribute to Male Sterility in Cotton PGMS Line

Zhang M, Liu J, Ma Q, Qin Y, Wang HT, Chen PY, Ma L, Fu XK, Zhu LF, Wei HL, Yu SX

BMC Genomics

21(1): 825

Temporal Salt Stress-induced Transcriptome Alterations and Regulatory Mechanisms Revealed by PacBio Long-reads RNA Sequencing in Gossypium hirsutum

Wang DL, Lu XK, Chen XG, Wang S, Wang JJ, Guo LX, Yin ZJ, Chen QJ, Ye WW

BMC Genomics

21: 838

GbMPK3 Overexpression Increases Cotton Sensitivity to Verticillium dahliae by Regulating Salicylic Acid Signaling

Long L, Xu FC, Zhao JR,  Li B, Xu L, Gao W

Plant Science

292: 110374

Pectate Lyase-like Gene GhPEL76 Regulates Organ Elongation in Arabidopsis and Fiber Elongation in Cotton

Huiru S, Hao PB, Gu LJ, Cheng SS, Wang HT, Wu AM, Ma L, Wei HL, Yu SX

Plant Science

293: 110395

Identification and Characterization Analysis of Sulfotransferases (SOTs) Gene Family in Cotton (Gossypium) and Its Involvement in Fiber Development

Wang LY, Liu XY, Wang XY, Pan ZE, Geng XL, Chen BJ, Liu BS，Du XM, Song XL

BMC Plant Biology

19(1): 595

Transcriptome Analysis Reveals the Defense Mechanism of Cotton Against Verticillium dahliae in the Presence of the Biocontrol Fungus Chaetomium globosum CEF-082

Zhang Y, Yang N, Zhao LH, Zhu HQ, Tang CM

BMC Plant Biology

20(1): 89

Identification of NHXs in Gossypium Species and the Positive Role of GhNHX1 in Salt Tolerance

Long L, Zhao JR, Guo DD, Ma XN, Xu FC, Yang WW, Gao W

BMC Plant Biology

20(1): 147

Genome-wide Identification of the Expansin Gene Family Reveals that Expansin Genes are Involved in Fibre Cell Growth in Cotton

Lv LM, Zuo DY, Wang XF, Cheng HL, Zhang YP, Wang QL, Song GL, Ma ZY

BMC Plant Biology

20(1): 223

Transcriptome Analyses Provide Insights into the Homeostatic Regulation of Axillary Buds in Upland Cotton (G. hirsutum L.).

Shi JB, Wang N, Zhou H, Xu QH, Yan GT

BMC Plant Biology

20(1): 228

Comparative Transcriptome Analysis Between Inbred and Hybrids Reveals Molecular Insights into Yield Heterosis of Upland Cotton

Shahzad K, Zhang XX, Guo LP, Qi TX, Bao LS, Zhang M, Zhang BB, Wang HL, Tang HN, Qiao XQ, Feng JJ, Wu JY, Xing CZ

BMC Plant Biology

20(1): 239

Genome-wide Association Study Reveals the Genetic Basis of Fiber Quality Traits in Upland Cotton (Gossypium hirsutum L.)

Liu W，Song CX，Ren ZY, Zhang ZQ, Pei XY, Liu YG, He KL, Zhang F, Zhao LJ, Zhang J, Wang XX, Yang DG, Li W

BMC Plant Biology

20(1): 395

Comparative Transcriptome Analysis Reveals Evolutionary Divergence and Shared Network of Cold and Salt Stress Response in Diploid D-genome Cotton

Xu YC, Magwanga RO, Jin DS, Cai XY, Hou YQ, Zheng JY, Agong SG, Wang KB, Liu F, Zhou ZL

BMC Plant Biology

20(1): 518

Transcriptome and QTL Analyses Reveal Candidate Genes for Fiber Quality in Upland Cotton

Wang HT, Zhang RT, Shen C, Li XM, Zhu D, Lin ZX

The Crop Journal

8(1): 98-106

Early ABA-stimulated Maintenance of Cl− Homeostasis by Mepiquat Chloride Priming Confers Salt Tolerance in Cotton Seeds

Wang N, Wang XR, Zhang HH, Liu XH, Shi JB, Dong Q, Xu QH, Gui HP, Song MZ, Yan GT

The Crop Journal

doi: 10.1016/j.cj.2020.08.004

Ectopic overexpression of a cotton plastidial Na+ transporter GhBASS5 impairs salt tolerance in Arabidopsis via increasing Na+ loading and accumulation

Myo T, Tian BM, Zhang Q, Niu SS, Liu ZX, Shi YH, Cao GQ, Ling H, Wei F, Shi GY

Planta

252: 41

Bt, Not a Threat to Propylea japonica

Zhao CC, Wu LK, Luo JY, Niu L, Wang CP, Zhu XZ, Wang L, Zhao P, Zhang S, Cui JJ

Frontiers in Physiology

11: 758

A Novel Peroxiredoxin From the Antagonistic Endophytic Bacterium Enterobacter sp. V1 Contributes to Cotton Resistance Against Verticillium dahliae

Zhang L, Tao Y, Zhao SY, Yin XY, Chen JM, Wang M, Cai YF, Niu QH

Plant Soil

454: 395-409

Comprehensive Analysis of Respiratory Burst Oxidase Homologs (Rboh) Gene Family and Function of GbRboh5/18 on Verticillium Wilt Resistance in Gossypium barbadense

Chang Y, Li B, Shi Q, Geng R, Geng S, Liu J, Zhang Y, Cai YF

Frontiers in Genetics

11: 788

Genome-Wide Identification and Expression Analysis of the NHX (Sodium/Hydrogen Antiporter) Gene Family in Cotton

Fu XK, Lu ZY, Wei HL, Zhang JJ, Yang X, Wu AM, Ma L, Kang M, Lu JH, Wang HT, Yu SX

Frontiers in Genetics

11: 964

Genome-Wide Identification and Expression Pattern Analysis of the HAK/KUP/KT Gene Family of Cotton in Fiber Development and Under Stresses

Yang X, Zhang JJ, Wu AM, Wei HL, Fu XK, Tian MM, Ma L, Lu JH, Wang HT, Yu SX

Frontiers in Genetics

11:

566469

Profiling of the Receptor for Activated C Kinase 1a (RACK1a) Interaction Network in Arabidopsis thaliana

Guo JG, Hu YH, Zhou YP, Zhu ZN, Sun YJ, Li JA, Wu R, Miao YC, Sun XW

Biochemical and Biophysical Research Communications

520(2): 366-372

COE 1 and GUN1 Regulate the Adaptation of Plants to High Light Stress

Guo JG, Zhou YP, Li JA, Sun YJ, Shangguan Y, Zhu ZN, Hu YH, Li T, Hu YJ, Rochaix JD, Miao YC, Sun XW

Biochemical and Biophysical Research Communications

521(1): 184-189

WRKY33-PIF4 Loop is Required for the Regulation of H2O2 Homeostasis

Sun YJ, Liu ZX, Guo JG, Zhu ZN, Zhou YP, Guo CX, Hu YH, Li JA, Shangguan Y, Li T, Hu YJ, Wu R, Li WQ, Rochaix JD, Miao YC, Sun XW

Biochemical and Biophysical Research Communications

527(4): 922-928

Identification and Profiling of MicroRNAs and Differentially Expressed Genes During Anther Development Between a Genetic Male‑sterile Mutant and Its Wildtype Cotton via High‑throughput RNA Sequencing

Yu DW, Li LB, Wei HL, Yu SX

Molecular Genetics and Genomics

295(3): 645-660

Identification of G Protein-coupled Receptors Required for Vitellogenesis and Egg Development in an Insect with Panoistic Ovary

Zheng HY, Zeng BJ, Shang TT, Zhou ST

Insect Science

doi: 10.1111/1744-7917.12841

Investigation of the EIL/EIN3 Transcription Factor Gene Family Members and Their Expression Levels in the Early Stage of Cotton Fiber Development

Salih H, He SP, Li HG, Peng Z, Du XM

Plants

9: 128

Genomic Insight into Differentiation and Selection Sweeps in the Improvement of Upland Cotton

Nazir MF, Jia YH, Ahmed H, He SP, Iqbal MS, Sarfraz Z, Ali M, Feng CF, Raza I, Sun GF, Pan ZE, Du XM

Plants

9: 711

Early Low-Fluence Red Light or Darkness Modulates the Shoot Regeneration Capacity of Excised Arabidopsis Roots

Wei X, Ding YP, Wang Y, Li FG, Ge XY

Plants

9: 1378

Overexpression of CDSP32 (GhTRX134) Cotton Gene Enhances Drought, Salt, and Oxidative Stress Tolerance in Arabidopsis

Mohammed E, Adeel A, Wang HT, Ma L, Yu SX, Wei HL

Plants

9: 1388

Genetic Variation Studies of Ionic and within Boll Yield Components in Cotton (Gossypium Hirsutum L.) Under Salt Stress

Muhammad MZ, Abdul R, Muhammad AF, Abdul R, Hina F, Amir S, Mo HJ, Ren MZ, Muhammad A, Yuan YL

Journal of Natural Fibers

doi: 10.1080/15440478.2020.1838996

Untangling the Molecular Mechanisms and Functions of Nitrate to Improve Nitrogen Use Efficiency

Iqbal A, Dong Q,Alamzeb M,Wang XR, Gui HP, Zhang HH, Pang NC, Zhang XL, Song MZ

Journal of the Science of Food and Agriculture

100(3): 904-914

Nitrogen Preference and Genetic Variation of Cotton Genotypes for Nitrogen Use Efficiency

Iqbal A, Dong Q, Wang XR, Gui HP, Zhang HH, Pang NC, Zhang XL, Song MZ

Journal of the Science of Food and Agriculture

100(6): 2761-2773

Plant Density Influences Reproductive Growth, Lint Yield and Boll Spatial Distribution of Cotton

Khan N, Han YC, Xing FF, Feng L, Wang ZB, Wang GP, Yang BF, Fan ZY, Lei YP, Xiong SW, Li XF, Li YB

Agronomy

10(1): 14

Comparative Yield, Fiber Quality and Dry Matter Production of Cotton Planted at Various Densities under Equidistant Row Arrangement

Khan N, Xing FF, Feng L, Wang ZB, Xin MH, Xiong SW, Wang GP, Chen HX, Du WL, Li YB

Agronomy

10(2): 232

Rhythmic Change of Adipokinetic Hormones Diurnally Regulates Locust Vitellogenesis and Egg Development

Zheng HY, Chen C, Liu CY, Song QS, Zhou ST

Insect Molecular Biology

29(3): 283-292

Salt Stress Induces Physiochemical Alterations in Rice Grain Composition and Quality

Abdul R , Arfan A, Luqman BS, Muhammad MZ, Yang R, Amir S, Abbad S, Muhammad A, Gong WK, Yuan YL

Journal of Food Science

85(1): 14-20

GhRH32 Negatively Regulates Cold Tolerance in Upland Cotton (Gossypium hirsutum L.)

Ge CW, Yang YF, Wang L, Li SC, Zhou YQ, Zhang SP, Liu SD, Chen J, Shen Q, Liu RH, Ma HJ, Li Y, Zhao XH, Pang CY

Plant Growth Regulation

91: 201-208

Germination and Emergence Characteristics of Prickly Lettuce (Lactuca serriola L.)

Wu HW, Asaduzzaman M, Shephard A, Hopwood M, Ma XY

Crop Protection

136: 105222

Identification of a Genome-specific Repetitive Element in the Gossypium D genome

Lu HJ, Cui XL, Zhao YY, Magwang RO, Li PC, Cai XY, Zhou ZL, Wang XX, Liu YL, Xu YC, Hou YQ, Peng RH, Wang KB，Liu F

PeerJ

doi: 10.7717/peerj.8344

Evaluation of the Biocontrol Potential of Endophytic Fungus Fusarium solani CEF559 against Verticillium dahiae in Cotton Plant

Wei F，Zhang Y, Shi YQ， Feng HJ， Zhao LH， Feng ZL，Zhu HQ

BioMed Research International

2019: 3187943

Improving Cropping Systems Reduces the Carbon Footprints of Wheat-cotton Production Under Different Soil Fertility Levels

Wang ZB, Wang GP, Han YC, Feng L, Fan ZY, Lei YP, Yang BF, Li XF, Xiong SW, Xing FF, Xin MH, Du WL, Li CD, Li YB

Archives of Agronomy and Soil Science

doi: 10.1018/03650340.2020.1720912

Nitrogen Modulates Cotton Root Morphology by Affecting Abscisic Acid (ABA) and Salicylic Acid (SA) Content

Chen J, Liu SD, Zhang SP, Ge CW, Shen Q, Ma HJ, Zhang XM, Dong HL, Zhao XH, Pang CY

Archives of Agronomy and Soil Science

doi: 10.1080/03650340.2020.1807518

DNA Sequencing Reveals Bacterial Communities in Midgut and Other Parts of the Larvae of Spodoptera exigua Hubner (Lepidoptera: Noctuidae)

Gao XK, Li WD, Luo JY, Zhang LJ, Ji JC, Zhu XZ, Wang Li, Zhang KX, Zhang S, Cui JJ

FEMS Microbiology Letters

367(4): fnaa002

Architecture of Stem and Branch Affects Yield Formation in Short Season Cotton

Zhang X, Rui QZ,  Li Y, Chen Y, Zhang XL, Chen DH, Song MZ

Journal of Integrative Agriculture

19(3): 680-689

Midgut De Novo Transcriptome Analysis and Gene Expression Profiling of Spodoptera exigua Larvae Exposed with Sublethal Concentrations of Cry1Ca Protein

Ren XL, Wang YY，Ma YJ, Jiang WL，Ma XY，Hu HY，Wang D，Ma Y

3 Biotech

10: 138

Roles and Mechanisms of Ca2+ in Regulating Primary Root Growth of Plants

Zhang XP, Ma CX, Sun LR, Hao FS

Plant Signaling & Behavior

15(5): 1748283

Different Strategies of Strigolactone and Karrikin Signals in Regulating the Resistance of Arabidopsis thaliana to Water-deficit Stress

Li WQ, Gupta A, Tian HT, Nguyen KH, Tran CD, Watanabe Y, Tian CJ, Li K, Yang Y, Guo JG, Luo Y, Miao YC, Tran LSP

Plant Signaling & Behavior

15(9): 1789321

Juvenile Hormone Upregulates Sugarbabe for Vitellogenesis and Egg Development in the Migratory Locust Locusta migratoria

Zeng BJ, Ye YR, Ma JJ，Song JS

Archives of Insect Biochemistry and  Physiology

doi: 10.1002/arch.21742

Development and Utilization of an InDel Marker Linked to the Fertility Restorer Genes of CMS-D8 and CMS-D2 in Cotton

Feng JJ, Zhu HY, Zhang M, Zhang XX, Guo LP, Qi TX, Tang HN, Wang HL, Qiao XQ, Zhang BB, Shahzad K, Xing CZ, Wu JY

Molecular Biology Reports

47(2): 1275-1282

Resource Use Efficiency in a Cotton-wheat Double-cropping System in the Yellow River Valley of China

Wang GP, Li YB, Han YC, Wang ZB, Yang BF, Li XF, Feng L

Experimental Agriculture

56(3): 422–439

Study of the Geostatistical Grid Maths Operation Method of Quantifying Water Movement in Soil Layers of a Cotton Field

Liu LY, Xing FF, Li YB, Han YC,Wang ZB, Zhi, XY, Wang GP, Feng L, Yang BF, Lei YP, Fan ZY, Du WL

Irrigation and drainage

doi: 10.1002/ird.2513

Germiantion of Solanum nigrum L. (Black Nightshade) in Response to Different Abiotic Factors

Dong H, Ma Y, Wu H, Jiang W, Ma XY

Planta Daninha

38: 020219463

Identification of QTLs and Candidate Genes for Physiological Traits Associated with Drought Tolerance in Cotton

Magwanga RO, Lu P, Kirungu JN, Cai XY, Zhou ZL, Agong SG, Wang KB, Liu F

Journal of Cotton Research

3: 3

QTL Mapping for Plant Height and Fruit Branch Number Based on RIL Population of Upland Cotton

Liu RX, Xiao XH, Gong JW, Li JW, Zhang Z, Liu AY, Lu QW,Shang HH, Shi YZ, Ge Q, Iqbal MS, Chen QJ, Yuan YL,Gong WK

Journal of Cotton Research

3: 5

Succinate Dehydrogenase SDH1–1 Positively egulates Cotton Resistance to Verticillium dahliae Through a salicylic acid pathway

Zhang XY, Feng ZL, Zhao LH, Liu SC, Wei F, Shi YQ, Feng HJ, Zhu HQ

Journal of Cotton Research

3: 12

Development and Application of Perfect SSR Markers in Cotton

Wu YZ, Huang LY, Zhou DY, Fu XQ, Li C, Wei SJ, Peng J, Kuang M

Journal of Cotton Research

3: 21

Genetic Map Construction and Functional Characterization of Genes within the Segregation Distortion Regions (SDRs) in the F2:3 Populations Derived from Wild Cotton Species of the D Genome

Kirungu JN, Magwanga RO, Shiraku ML, Lu P, Mehari TG, Xu YC, Hou YQ, Agong SG, Zhou Y, Cai XY, Zhou ZL , Wang KB, Liu F

Journal of Cotton Research

3: 22